Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6542395 chr2:118568882 T/C 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs6545266 chr2:24314978 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs6545267 chr2:24315182 G/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs6548706 chr3:80559586 T/G 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs6548707 chr3:80559627 T/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs6548710 chr3:80577006 C/T 6.99E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs6548711 chr3:80582070 T/C 7.16E-5 175 19.53 24.77 27.2 KM Plot
PCPG rs6548712 chr3:80592690 C/T 0.000124 177 19.87 24.03 27.4 KM Plot
PCPG rs6548714 chr3:80596889 C/T 0.000125 177 19.87 24.03 27.4 KM Plot
PCPG rs6548715 chr3:80597108 G/A 0.000125 177 19.87 24.03 27.4 KM Plot
PCPG rs6548717 chr3:80606777 A/G 0.000119 178 26.53 23.53 19.87 KM Plot
PCPG rs6554817 chr5:13820656 G/A 6.07E-5 176 27.3 19.58 19.28 KM Plot
PCPG rs6557278 chr6:150382788 C/G 3.56E-5 178 3.17 25 25.77 KM Plot
PCPG rs6561732 chr13:54184113 A/G 0.000222 178 25.67 20.17 3.17 KM Plot
PCPG rs6563507 chr13:37590967 A/G 0.000272 178 4.17 25 25.47 KM Plot